PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004233
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 568aa    MW: 61360.1 Da    PI: 6.9857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004233genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30326384259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  DCAR_004233 326 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 384
                  7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-33310386IPR003657WRKY domain
SuperFamilySSF1182909.81E-28318386IPR003657WRKY domain
PROSITE profilePS5081129.402320386IPR003657WRKY domain
SMARTSM007742.3E-36325385IPR003657WRKY domain
PfamPF031061.7E-26327384IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDRGWGLTLD NCDQSAGFFL NNNKPSSAGF CLTPRRPNIS VNMFSMNNTG KDSPASSPSG  60
DNRKAVPGEL DFFASKPTNY DHHDNSVNYP VMNSSSIVVK QEKSHGEASQ MDVNTGLHLL  120
TANAGSDQSM VDDGVSSNVV DKRAKNELVQ IQSELERMNI ENQRLRGMLS QVTNNYAALQ  180
MHLATIMEQQ NARAGRTQEH DQIAEEKLEE KTDDRSGDQG QIVPRQFLDL GPSNQAHSSS  240
EERTQSESGI NNVELSHNGN RINSMGKRLG RDDSPESESW NPNKTPKLAA AAASNSNSKA  300
IEQATEATMR KARVSVRARS EAPMITDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR  360
KQVQRCAEDR TILITTYEGT HNHPLPPAAM AMASTTSAAA NMLLSGSMSS ADGILNPNIL  420
ARAILPVSSS SMATISASAP FPTVTLDLTH SPNPLQYQRP PSQFQLPFQA PQSFVGLPPT  480
PQIYGHPIHN QSKFSGLHVS SQDMESSQAH QAPPQFHQAQ PQTSFADTLS AATAAITADP  540
NFTAALAAAI SSIMGGNSSH QNNNNNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22312388176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9C5191e-156WRKY6_ARATH; WRKY transcription factor 6
TrEMBLD0PSE90.0D0PSE9_9LAMI; WRKY transcription factor
STRINGVIT_10s0116g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-130WRKY family protein